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病毒基因组
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基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV20547032 hCoV-19/deer/USA/KY-22-013500-006/2022 EPI_ISL_16467176 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2022-03-10 Odocoileus virginianus 29810 2023-01-10 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID USDA-NWRC Wildlife Services Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA 29808 99.99
OEAV20547042 hCoV-19/deer/USA/NC-22-002350-031/2021 EPI_ISL_16464977 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-11-20 Odocoileus virginianus 29789 2023-01-10 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID USDA-NWRC Wildlife Services Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29774 99.95
OEAV20547056 hCoV-19/deer/USA/NY-22-006202-013/2021 EPI_ISL_16464984 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-12-14 Odocoileus virginianus 29639 2023-01-10 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID USDA-NWRC Wildlife Services Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 27943 94.28
OEAV20547067 hCoV-19/deer/USA/TN-22-010212-017/2021 EPI_ISL_16467169 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-12-12 Odocoileus virginianus 29737 2023-01-10 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID USDA-NWRC Wildlife Services Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA 28530 95.94
OEAV20547070 hCoV-19/deer/USA/WV-22-010212-019/2022 EPI_ISL_16467170 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2022-01-26 Odocoileus virginianus 29639 2023-01-10 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID USDA-NWRC Wildlife Services Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA 28289 95.45
OEAV21044768 hCoV-19/deer/USA/CA-NVSL-23-003814-002/2021 EPI_ISL_17347803 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-09-25 Odocoileus hemionus 29822 2023-03-29 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID California Animal Health and Food Safety Laboratory - University of California-Davis Thanh Chinh, Emily Love, Kerrie Franzen, Mary Lea Killian, Kristina Lantz, Tod Stuber, Jessica Hicks, Cameron Norris Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29603 99.27
OEAV21410724 hCoV-19/deer/USA/KS-22-010212-007/2021 EPI_ISL_17810984 RNA virus Severe acute respiratory syndrome coronavirus 2 USA 2021-12-13 Odocoileus virginianus 29755 2023-06-17 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID National Wildlife Research Center Wildlife Services, U.S. Department of Agriculture Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Jessica Hicks, Mia Torchetti, Kristina Lantz, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, U.S. Department of Agriculture 29755 100.00
OEAV21410725 hCoV-19/deer/USA/MN-22-010212-011/2021 EPI_ISL_17810980 RNA virus Severe acute respiratory syndrome coronavirus 2 USA 2021-12-16 Odocoileus virginianus 29792 2023-06-17 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID National Wildlife Research Center Wildlife Services, U.S. Department of Agriculture Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Jessica Hicks, Mia Torchetti, Kristina Lantz, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, U.S. Department of Agriculture 29792 100.00
OEAV21410726 hCoV-19/deer/USA/NJ-22-007926-021/2022 EPI_ISL_17810975 RNA virus Severe acute respiratory syndrome coronavirus 2 USA 2022-01-06 Odocoileus virginianus 29792 2023-06-17 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID National Wildlife Research Center Wildlife Services, U.S. Department of Agriculture Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Jessica Hicks, Mia Torchetti, Kristina Lantz, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, U.S. Department of Agriculture 29792 100.00
OEAV21410727 hCoV-19/deer/USA/NJ-22-010212-001/2022 EPI_ISL_17810977 RNA virus Severe acute respiratory syndrome coronavirus 2 USA 2022-01-06 Odocoileus virginianus 29851 2023-06-17 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID National Wildlife Research Center Wildlife Services, U.S. Department of Agriculture Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Jessica Hicks, Mia Torchetti, Kristina Lantz, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, U.S. Department of Agriculture 29851 100.00
OEAV21410728 hCoV-19/deer/USA/NJ-22-010212-004/2022 EPI_ISL_17810978 RNA virus Severe acute respiratory syndrome coronavirus 2 USA 2022-01-06 Odocoileus virginianus 29789 2023-06-17 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID National Wildlife Research Center Wildlife Services, U.S. Department of Agriculture Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Jessica Hicks, Mia Torchetti, Kristina Lantz, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, U.S. Department of Agriculture 29789 100.00
OEAV21410729 hCoV-19/deer/USA/NJ-22-010212-015/2022 EPI_ISL_17810974 RNA virus Severe acute respiratory syndrome coronavirus 2 USA 2022-01-06 Odocoileus virginianus 29792 2023-06-17 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID National Wildlife Research Center Wildlife Services, U.S. Department of Agriculture Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Jessica Hicks, Mia Torchetti, Kristina Lantz, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, U.S. Department of Agriculture 29792 100.00
OEAV21410730 hCoV-19/deer/USA/NJ-22-010212-021/2022 EPI_ISL_17810976 RNA virus Severe acute respiratory syndrome coronavirus 2 USA 2022-01-18 Odocoileus virginianus 29787 2023-06-17 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID National Wildlife Research Center Wildlife Services, U.S. Department of Agriculture Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Jessica Hicks, Mia Torchetti, Kristina Lantz, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, U.S. Department of Agriculture 29787 100.00
OEAV21410731 hCoV-19/deer/USA/TN-22-010212-023/2022 EPI_ISL_17810979 RNA virus Severe acute respiratory syndrome coronavirus 2 USA 2022-01-11 Odocoileus virginianus 29784 2023-06-17 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID National Wildlife Research Center Wildlife Services, U.S. Department of Agriculture Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Jessica Hicks, Mia Torchetti, Kristina Lantz, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, U.S. Department of Agriculture 29784 100.00
OEAV21410732 hCoV-19/deer/USA/TN-22-010212-024/2021 EPI_ISL_17810985 RNA virus Severe acute respiratory syndrome coronavirus 2 USA 2021-12-13 Odocoileus virginianus 28470 2023-06-17 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID National Wildlife Research Center Wildlife Services, U.S. Department of Agriculture Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Jessica Hicks, Mia Torchetti, Kristina Lantz, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, U.S. Department of Agriculture 28470 100.00
OEAV21467801 hCoV-19/muledeer/USA/AZ-23-015645-001/2022 EPI_ISL_17851798 RNA virus Severe acute respiratory syndrome coronavirus 2 USA 2022-10-08 Odocoileus hemionus 29818 2023-06-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID USDA-NWRC Wildlife Services Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Thanh Chinh, Mikaela Ozella, Tod P. Stuber, Cameron Norris, Jessica Hicks, Kristina Lantz, Mia Torchetti National Veterinary Services Laboratories - USDA Diagnostic Virology Laboratory 29767 99.83
OEAV22162321 hCoV-19/deer/USA/GA-23-038776-001/2023 EPI_ISL_18755965 RNA virus Severe acute respiratory syndrome coronavirus 2 USA 2023-11-10 Odocoileus virginianus 29746 2024-01-12 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Tifton Veterinary Diagnostic and Investigational Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Mikaela Ozella, Tod P. Stuber, Jessica Hicks, Cameron Norris, Mia Torchetti, Kristina Lantz Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 28755 96.67
OEAV22162322 hCoV-19/deer/USA/GA-23-038776-002/2023 EPI_ISL_18755966 RNA virus Severe acute respiratory syndrome coronavirus 2 USA 2023-11-10 Odocoileus virginianus 29783 2024-01-12 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Tifton Veterinary Diagnostic and Investigational Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Mikaela Ozella, Tod P. Stuber, Jessica Hicks, Cameron Norris, Mia Torchetti, Kristina Lantz Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29782 100.00
OEAV22162323 hCoV-19/deer/USA/GA-23-038776-004/2023 EPI_ISL_18755967 RNA virus Severe acute respiratory syndrome coronavirus 2 USA 2023-11-10 Odocoileus virginianus 29741 2024-01-12 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Tifton Veterinary Diagnostic and Investigational Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Mikaela Ozella, Tod P. Stuber, Jessica Hicks, Cameron Norris, Mia Torchetti, Kristina Lantz Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 28223 94.90
OEAV22389686 hCoV-19/white-taileddeer/USA/MN-MDH-41466/2023 EPI_ISL_19058398 RNA virus Severe acute respiratory syndrome coronavirus 2 USA 2023-11-10 Odocoileus virginianus 29704 2024-04-18 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID University of Minnesota Jacob Garfin, Matt Plumb, Kelly Pung, Sarah Namugenyi, Alyssa Mondelli, Bonnie Weber, Henry D Kunerth, Daniel Evans, and Xiong Wang Minnesota Department of Health, Public Health Laboratory 27502 92.59
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